With Sweet Honey

  • Home
  • Recipe Index
  • Portfolio
  • My Story
    • Work With Me
menu icon
go to homepage
  • Recipes
  • About
  • Portfolio
  • Subscribe
subscribe
search icon
Homepage link
  • Recipes
  • About
  • Portfolio
  • Subscribe
×
Home » Breakfast

Gluten Free Healthy Pumpkin Muffins

Published: Sep 18, 2022 · Modified: Sep 5, 2024 by Katelyn | With Sweet Honey · This post may contain affiliate links Leave a Comment

Jump to Recipe Print Recipe

It’s fall once again and these healthy pumpkin muffins are exactly what the season calls for. They’re gluten and dairy free, made with ingredients like oat flour, almond milk, and lightly sweetened with coconut sugar. So what are you waiting for, let’s get baking!

pumpkin muffins with chopped walnuts on top and cinnamon sticks

Healthy Pumpkin Muffins

Are there any other fall flavors that are better than pumpkin, cinnamon, nutmeg, and cloves? I don’t think so. We are all about pumpkin spice around here this time of year so it was only natural to come up with a gluten free version of the classic pumpkin muffin. 

pumpkin muffins with walnuts on top and in white muffin liners

I love this recipe because these muffins are soft and packed with delicious pumpkin flavor. They’re simple to make too, making them the perfect recipe to get the kids involved! My daughter loves mixing so she’s usually in charge of that while I handle the ingredients. And just like that, we have a tasty snack that is filled with fall flavor in under 25 minutes.

one pumpkin muffin with an unwrapped liner followed by muffins in liners

Ingredients for gluten free pumpkin muffins

  • Gluten Free Oat Flour: Oat flour is usually pretty easy to find in local grocery stores or online. I like to use Bob’s Red Mill Oat Flour for this recipe. Alternatively, you can blend rolled oats in a blender on high to make your own oat flour.
  • Pumpkin Puree: Make sure to check that you’re using only 100% pumpkin puree. There should only be pumpkin as the ingredient on the can. Some stores also sell pumpkin pie mix next to the pumpkin puree cans so it can get confusing.
  • Coconut Sugar: These muffins are sweetened with coconut sugar. You can substitute the coconut sugar with brown sugar if preferred but brown sugar tends to be a little sweeter.
  • Almond Milk: I use unsweetened almond milk but you could use oat or regular milk.
  • Eggs: I suggest using room temperature eggs. This helps prevent the coconut oil from clumping while mixing. I have not tested this muffin recipe using a flax egg so I am not sure if you can use them as a substitute. If you do try it, I’d love to hear how it turned out. 
  • Coconut Oil: The coconut oil should be melted before adding it to the mixture. 
  • Spices: We combine cinnamon, nutmeg, cloves, and ginger for that delicious pumpkin spice flavor.
  • Vanilla Extract: For some extra vanilla flavor.
  • Salt: Just a bit of salt for more flavor.
  • Baking Powder and Baking Soda: To help give some rise and texture to the muffins.
  • Chopped Pecans: The pecans are optional but I think they add delicious flavor and texture to the muffin tops.
pumpkin muffins with white liners and chopped walnuts on top

How to make pumpkin muffins

Step 1: Preheat the oven to 350 degrees Fahrenheit and prepare a muffin tin with 12 liners.

Step 2: Mix together the oat flour, cinnamon, baking powder, baking soda, nutmeg, cloves, ginger and salt. Stir until combined.

pumpkin muffin flour mixture in a glass bowl with a wooden spoon

Step 3: In a separate bowl, whisk together the pumpkin puree, coconut sugar, almond milk, eggs, coconut oil, and vanilla extract until combined. Add the dry ingredients with the wet and stir. The batter should be smooth.

wet ingredients for pumpkin muffins in a glass bowl
pumpkin muffin batter in a glass mixing bowl

Step 4: Divide the batter into the 12 muffin liners, filling about ⅔ of the way up. Top with chopped pecans (optional).

overhead of unbaked pumpkin muffins with chopped walnuts on top in a muffin pan

Step 5: Bake for about 20 minutes or until a toothpick or knife comes out clean.

Recommended Equipment

  • Muffin Pan: These pans have multiple uses and not just for muffins. 
  • Mixing Bowls: I love when bowls are stackable. It saves so much space in the kitchen!

Storage Tips!

If your family is like mine, these muffins won’t last long because everyone will want to try them. But if you have leftovers, store the cooled pumpkin muffins in the refrigerator for up to 4 days in an airtight container. 

Freeze the muffins for up to 3 months. Let thaw overnight in the fridge or microwave for a quick thaw.

Looking for more fall flavors?

  • Gluten Free Pumpkin Pancakes
  • Perfect Paleo Pumpkin Pie Bars
  • Pumpkin Spice Latte Recipe
  • Gluten Free Pumpkin Snickerdoodle Cookies
  • Stuffed Acorn Squash With Sausage and Apple
  • Maple Snickerdoodle Cookies

I want to hear about it!

Did you like this pumpkin muffin recipe? Let me know in the comments below and let me know how you like to serve this salad. Also check out our Instagram for more food photography inspiration and recipes!

If you’d like to stay in the know about all things With Sweet Honey, please consider subscribing to our newsletter!

This post contains affiliate links. Thank you for supporting With Sweet Honey!

pumpkin muffin with chopped walnuts on top

Gluten Free Healthy Pumpkin Muffins

These healthy pumpkin muffins are gluten and dairy free, made with ingredients like oat flour, almond milk, and lightly sweetened with coconut sugar. Perfect for breakfast or snack!
Print Pin Rate
Course: Breakfast
Cuisine: American
Prep Time: 10 minutes minutes
Cook Time: 20 minutes minutes
Total Time: 30 minutes minutes
Servings: 12 muffins
260 Katelyn Rausch

Equipment

  • muffin pan

Ingredients

Dry Ingredients

  • 2 cups gluten free oat flour (about 7 oz)
  • 2 teaspoon ground cinnamon
  • 1 teaspoon baking powder
  • ½ tsp baking soda
  • ½ teaspoon ground nutmeg
  • ½ teaspoon ground cloves
  • ¼ teaspoon ground ginger
  • ¼ teaspoon salt

Wet Ingredients

  • 1 cup pure pumpkin puree
  • ¾ cup coconut sugar
  • ¼ cup almond milk room temperature
  • 2 eggs room temperature
  • 2 tablespoon coconut oil melted
  • 1 teaspoon vanilla extract

Topping

  • chopped pecans
Prevent your screen from going dark

Instructions

  • Preheat the oven to 350 degrees Fahrenheit and prepare a muffin tin with 12 liners.
  • Mix together the oat flour, cinnamon, baking powder, baking soda, nutmeg, cloves, ginger and salt. Stir until combined.
  • In a separate bowl, whisk together the pumpkin puree, coconut sugar, almond milk, eggs, coconut oil, and vanilla extract until combined. Add the dry ingredients with the wet and stir. The batter should be smooth.
  • Divide the batter into the 12 muffin liners, filling about ⅔ of the way up. Top with chopped pecans (optional).
  • Bake for about 20 minutes or until a toothpick comes out clean.

Notes

To Store: Store muffins in the fridge for up to 4 days in an airtight container. 
To Freeze: Freeze muffins for up to 3 months. Thaw overnight in the fridge or microwave.
 
Tried this recipe?Tag @withsweethoney on Instagram!

Nutrition

Serving: 1muffin | Calories: 260kcal | Carbohydrates: 40.9g | Protein: 8.5g | Fat: 7.4g | Saturated Fat: 3.8g | Cholesterol: 27mg | Sodium: 114mg | Potassium: 69mg | Fiber: 4.9g | Sugar: 12.6g | Calcium: 52mg | Iron: 2mg

More Breakfast & Brunch

  • Sliced pumpkin oatmeal bars topped with chocolate chips in a baking dish with one slice removed.
    Gluten Free Pumpkin Spice Oatmeal Bars
  • Stacked homemade gluten-free granola bars with mini chocolate chips and dried blueberries on a parchment-lined surface.
    Homemade Gluten-Free Granola Bars
  • Tall stack of fluffy gluten-free carrot cake pancakes topped with creamy frosting and chopped pecans.
    Fluffy Gluten Free Carrot Cake Pancakes
  • Maple vanilla cashew cream mixed together and served in a small bowl.
    Maple Vanilla Cashew Cream

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




headshot

Hi, I'm Katelyn!

I create gluten-free, dairy-free, and paleo recipes that are easy and delicious. Food should make you feel good, and I hope my recipes inspire you to try something new. Happy cooking!

More About Me

Fall Recipes

  • Sliced pumpkin oatmeal bars topped with chocolate chips in a baking dish with one slice removed.
    Gluten Free Pumpkin Spice Oatmeal Bars
  • pumpkin muffin with chopped walnuts on top
    Gluten Free Healthy Pumpkin Muffins
  • Chicken thighs on a sheet pan with chopped vegetables.
    Harvest Chicken Sheet Pan Dinner
  • sloppy joe meat in a white bowl with sweet potatoes, jalapeño, and pickle slices
    Whole30 Sloppy Joes
  • creamy potato kale sausage soup in a white bowl with spoon next to it on a blue plate
    Potato Kale Sausage Soup
  • bowl of lasagna soup with wilted spinach and a dollop of ricotta cheese on top
    Gluten Free Lasagna Soup (Dairy Free)

More summer recipes

Browse By Category

Breakfast
Dinner
Desserts
Soup
Cookies

Browse recipe index

Popular Recipes

  • bowl of mixed broccoli salad in a white bowl
    Broccoli Salad with Honey Dijon Dressing
  • Skillet with cooked seasoned chicken breasts in a creamy sauce with sun-dried tomatoes and basil.
    Dairy Free Marry Me Chicken
  • stack of oatmeal breakfast cookies on a white plate
    Healthy Oatmeal Toddler Breakfast Cookies
  • creamy potato kale sausage soup in a white bowl with spoon next to it on a blue plate
    Potato Kale Sausage Soup

Did you try a recipe?

Please tag and follow along

@withsweethoney

and

#withsweethoney

on social!

Footer

↑ back to top

Explore

  • Recipe Index
  • My Story
  • Work With Me
  • Privacy Policy

Connect

  • Contact
  • Subscribe for emails and updates

Copyright © 2026 With Sweet Honey, LLC | All Rights Reserved • This website contains affiliate links, which means that if you click on a product link, we may receive a commission in return. With Sweet Honey is a participant in the Amazon Services LLC Associates Program, an affiliate advertising program designed to provide a means for sites to earn advertising fees by advertising and linking to Amazon.com.